J3_6MKN_006

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6MKN|1|A|A|975, 6MKN|1|A|G|976, 6MKN|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MKN_006 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0705

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6MKN|1|A|U|955
6MKN|1|A|U|956
6MKN|1|A|U|957
6MKN|1|A|A|958
6MKN|1|A|A|959
6MKN|1|A|U|960
6MKN|1|A|U|961
6MKN|1|A|C|962
*
6MKN|1|A|G|973
6MKN|1|A|A|974
6MKN|1|A|A|975
6MKN|1|A|G|976
6MKN|1|A|A|977
6MKN|1|A|A|978
6MKN|1|A|C|979
6MKN|1|A|C|980
6MKN|1|A|U|981
6MKN|1|A|U|982
6MKN|1|A|A|983
6MKN|1|A|C|984
*
6MKN|1|A|G|1221
6MKN|1|A|G|1222
6MKN|1|A|C|1223
6MKN|1|A|G|1224
6MKN|1|A|A|1225

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19