J3_6MKN_008

3D structure

PDB id

6MKN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

GGAACC*GGGUGC*GAGCCC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MKN|1|A|G|1002
6MKN|1|A|G|1003
6MKN|1|A|A|1004
6MKN|1|A|A|1005
6MKN|1|A|C|1006
6MKN|1|A|C|1007
*
6MKN|1|A|G|1022
6MKN|1|A|G|1023
6MKN|1|A|G|1024
6MKN|1|A|U|1025
6MKN|1|A|G|1026
6MKN|1|A|C|1027
*
6MKN|1|A|G|1034
6MKN|1|A|A|1035
6MKN|1|A|G|1036
6MKN|1|A|C|1037
6MKN|1|A|C|1038
6MKN|1|A|C|1039

Current chains

Chain A

16S rRNA

Nearby chains