J3_6MPF_007

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6MPF|1|A|A|952, 6MPF|1|A|G|953, 6MPF|1|A|A|955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MPF_007 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.0629

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MPF|1|A|U|932
6MPF|1|A|U|933
6MPF|1|A|U|934
6MPF|1|A|A|935
6MPF|1|A|A|936
6MPF|1|A|U|937
6MPF|1|A|U|938
6MPF|1|A|C|939
*
6MPF|1|A|G|950
6MPF|1|A|A|951
6MPF|1|A|A|952
6MPF|1|A|G|953
6MPF|1|A|A|954
6MPF|1|A|A|955
6MPF|1|A|C|956
6MPF|1|A|C|957
6MPF|1|A|U|958
6MPF|1|A|U|959
6MPF|1|A|A|960
6MPF|1|A|C|961
*
6MPF|1|A|G|1202
6MPF|1|A|G|1203
6MPF|1|A|C|1204
6MPF|1|A|G|1205
6MPF|1|A|A|1206

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19