J3_6MPF_016

3D structure

PDB id

6MPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGC-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UAGGGAACC*GGGUGC*GAGCCCUA

Length

23 nucleotides

Bulged bases

6MPF|1|A|A|983, 6MPF|1|A|G|1002, 6MPF|1|A|U|1003, 6MPF|1|A|G|1004

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MPF|1|A|U|977
6MPF|1|A|A|978
6MPF|1|A|G|979
6MPF|1|A|G|980
6MPF|1|A|G|981
6MPF|1|A|A|982
6MPF|1|A|A|983
6MPF|1|A|C|984
6MPF|1|A|C|985
*
6MPF|1|A|G|1000
6MPF|1|A|G|1001
6MPF|1|A|G|1002
6MPF|1|A|U|1003
6MPF|1|A|G|1004
6MPF|1|A|C|1005
*
6MPF|1|A|G|1016
6MPF|1|A|A|1017
6MPF|1|A|G|1018
6MPF|1|A|C|1019
6MPF|1|A|C|1020
6MPF|1|A|C|1021
6MPF|1|A|U|1022
6MPF|1|A|A|1023

Current chains

Chain A

16S rRNA

Nearby chains