J3_6MPI_007

3D structure

PDB id

6MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

6MPI|1|A|A|975, 6MPI|1|A|G|976, 6MPI|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MPI_007 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.055

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_88451.1

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6MPI|1|A|U|955
6MPI|1|A|U|956
6MPI|1|A|U|957
6MPI|1|A|A|958
6MPI|1|A|A|959
6MPI|1|A|U|960
6MPI|1|A|U|961
6MPI|1|A|C|962
*
6MPI|1|A|G|973
6MPI|1|A|A|974
6MPI|1|A|A|975
6MPI|1|A|G|976
6MPI|1|A|A|977
6MPI|1|A|A|978
6MPI|1|A|C|979
6MPI|1|A|C|980
6MPI|1|A|U|981
6MPI|1|A|U|982
6MPI|1|A|A|983
6MPI|1|A|C|984
*
6MPI|1|A|G|1221
6MPI|1|A|G|1222
6MPI|1|A|C|1223
6MPI|1|A|G|1224
6MPI|1|A|A|1225

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19