3D structure

PDB id
6MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a 2-thiocytidine (s2C32) and inosine (I34) modified anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 1 (TRNAARG1) bound to an mRNA with an CGU-codon in the A-site and paromomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.33 Å

Loop

Sequence
GAAC*GGUGC*GAGCC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6MPI|1|A|G|1003
6MPI|1|A|A|1004
6MPI|1|A|A|1005
6MPI|1|A|C|1006
*
6MPI|1|A|G|1023
6MPI|1|A|G|1024
6MPI|1|A|U|1025
6MPI|1|A|G|1026
6MPI|1|A|C|1027
*
6MPI|1|A|G|1034
6MPI|1|A|A|1035
6MPI|1|A|G|1036
6MPI|1|A|C|1037
6MPI|1|A|C|1038

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:

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