J3_6MTB_029

3D structure

PDB id

6MTB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with P- and Z-site tRNAs (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUGG*CUUAGAUG

Length

20 nucleotides

Bulged bases

6MTB|1|9|G|1274, 6MTB|1|9|U|1505, 6MTB|1|9|G|1507, 6MTB|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTB|1|9|C|1272
6MTB|1|9|C|1273
6MTB|1|9|G|1274
6MTB|1|9|G|1275
6MTB|1|9|A|1276
6MTB|1|9|C|1277
*
6MTB|1|9|G|1320
6MTB|1|9|G|1321
6MTB|1|9|G|1322
6MTB|1|9|U|1323
6MTB|1|9|G|1324
6MTB|1|9|G|1325
*
6MTB|1|9|C|1503
6MTB|1|9|U|1504
6MTB|1|9|U|1505
6MTB|1|9|A|1506
6MTB|1|9|G|1507
6MTB|1|9|A|1508
6MTB|1|9|U|1509
6MTB|1|9|G|1510

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

40S ribosomal protein S10

Chain dd

40S ribosomal protein S29

Chain ff

40S ribosomal protein S27a