J3_6MTC_010

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6MTC|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTC|1|5|A|2551
6MTC|1|5|G|2552
6MTC|1|5|A|2553
6MTC|1|5|U|2554
6MTC|1|5|G|2555
*
6MTC|1|5|C|2572
6MTC|1|5|A|2573
6MTC|1|5|G|2574
6MTC|1|5|U|2575
*
6MTC|1|5|A|2757
6MTC|1|5|G|2758
6MTC|1|5|G|2759
6MTC|1|5|G|2760
6MTC|1|5|U|2761
6MTC|1|5|G|2762
6MTC|1|5|U|2763
6MTC|1|5|A|2764
6MTC|1|5|A|2765
6MTC|1|5|A|2766
6MTC|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27