J3_6MTC_013
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)C*GCGAC
- Length
- 26 nucleotides
- Bulged bases
- 6MTC|1|5|C|4116, 6MTC|1|5|U|4117, 6MTC|1|5|U|4118, 6MTC|1|5|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTC|1|5|G|4091
6MTC|1|5|G|4092
6MTC|1|5|G|4093
6MTC|1|5|G|4094
*
6MTC|1|5|C|4114
6MTC|1|5|G|4115
6MTC|1|5|C|4116
6MTC|1|5|U|4117
6MTC|1|5|U|4118
6MTC|1|5|C|4119
6MTC|1|5|U|4120
6MTC|1|5|G|4121
6MTC|1|5|G|4122
6MTC|1|5|C|4123
6MTC|1|5|G|4124
6MTC|1|5|C|4125
6MTC|1|5|C|4126
6MTC|1|5|A|4127
6MTC|1|5|A|4128
6MTC|1|5|B8W|4129
6MTC|1|5|C|4130
*
6MTC|1|5|G|4154
6MTC|1|5|C|4155
6MTC|1|5|G|4156
6MTC|1|5|A|4157
6MTC|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain X
- 60S ribosomal protein L23a
- Chain Z
- 60S ribosomal protein L27
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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