3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
Length
25 nucleotides
Bulged bases
6MTC|1|9|G|1256, 6MTC|1|9|A|1258
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6MTC_027 not in the Motif Atlas
Homologous match to J3_8C3A_040
Geometric discrepancy: 0.108
The information below is about J3_8C3A_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.3
Basepair signature
cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
Number of instances in this motif group
4

Unit IDs

6MTC|1|9|C|1237
6MTC|1|9|U|1238
6MTC|1|9|U|1239
6MTC|1|9|A|1240
6MTC|1|9|A|1241
6MTC|1|9|U|1242
6MTC|1|9|PSU|1243
6MTC|1|9|U|1244
*
6MTC|1|9|G|1255
6MTC|1|9|G|1256
6MTC|1|9|G|1257
6MTC|1|9|A|1258
6MTC|1|9|A|1259
6MTC|1|9|A|1260
6MTC|1|9|C|1261
6MTC|1|9|C|1262
6MTC|1|9|U|1263
6MTC|1|9|C|1264
6MTC|1|9|A|1265
6MTC|1|9|C|1266
*
6MTC|1|9|G|1516
6MTC|1|9|G|1517
6MTC|1|9|C|1518
6MTC|1|9|U|1519
6MTC|1|9|G|1520

Current chains

Chain 9
18S rRNA

Nearby chains

Chain PP
40S ribosomal protein S15
Chain SS
40S ribosomal protein S18
Chain UU
40S ribosomal protein S20
Chain dd
40S ribosomal protein S29

Coloring options:


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