3D structure

PDB id
6MTC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUC*GCCGGGC*GGCCACGCGUCCCCCGCG
Length
28 nucleotides
Bulged bases
6MTC|1|5|C|1237, 6MTC|1|5|G|1271, 6MTC|1|5|C|1272
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6MTC|1|5|C|982
6MTC|1|5|U|983
6MTC|1|5|C|984
*
6MTC|1|5|G|1070
6MTC|1|5|C|1071
6MTC|1|5|C|1072
6MTC|1|5|G|1073
6MTC|1|5|G|1074
6MTC|1|5|G|1075
6MTC|1|5|C|1076
*
6MTC|1|5|G|1234
6MTC|1|5|G|1235
6MTC|1|5|C|1236
6MTC|1|5|C|1237
6MTC|1|5|A|1238
6MTC|1|5|C|1239
6MTC|1|5|G|1244
6MTC|1|5|C|1245
6MTC|1|5|G|1246
6MTC|1|5|U|1247
6MTC|1|5|C|1248
6MTC|1|5|C|1249
6MTC|1|5|C|1250
6MTC|1|5|C|1251
6MTC|1|5|C|1252
6MTC|1|5|G|1271
6MTC|1|5|C|1272
6MTC|1|5|G|1273

Current chains

Chain 5
28S rRNA

Nearby chains

Chain C
60S ribosomal protein L4
Chain E
60S ribosomal protein L6
Chain F
60S ribosomal protein L7
Chain b
60S ribosomal protein L29

Coloring options:

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