J3_6MTC_039
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 6MTC|1|5|C|2470, 6MTC|1|5|A|2472, 6MTC|1|5|G|2475
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTC|1|5|A|2451
6MTC|1|5|G|2452
6MTC|1|5|A|2453
6MTC|1|5|U|2454
6MTC|1|5|G|2455
6MTC|1|5|G|2456
*
6MTC|1|5|C|2465
6MTC|1|5|G|2466
6MTC|1|5|U|2467
6MTC|1|5|U|2468
6MTC|1|5|C|2469
6MTC|1|5|C|2470
6MTC|1|5|G|2471
6MTC|1|5|A|2472
6MTC|1|5|A|2473
6MTC|1|5|G|2474
6MTC|1|5|G|2475
6MTC|1|5|G|2476
*
6MTC|1|5|C|2501
6MTC|1|5|A|2502
6MTC|1|5|G|2503
6MTC|1|5|C|2504
6MTC|1|5|C|2505
6MTC|1|5|G|2506
6MTC|1|5|A|2507
6MTC|1|5|PSU|2508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L8
- Chain G
- 60S ribosomal protein L7a
- Chain N
- 60S Ribosomal protein L15
- Chain X
- 60S ribosomal protein L23a
- Chain j
- 60S ribosomal protein L37
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