J3_6MTD_001

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6MTD|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|112
6MTD|1|5|A|113
6MTD|1|5|G|114
6MTD|1|5|C|115
6MTD|1|5|G|116
*
6MTD|1|5|C|155
6MTD|1|5|G|156
6MTD|1|5|U|157
6MTD|1|5|A|158
6MTD|1|5|C|159
6MTD|1|5|G|160
*
6MTD|1|5|C|275
6MTD|1|5|C|276
6MTD|1|5|G|277
6MTD|1|5|G|278

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain L

eL13

Chain N

eL15

Chain h

uL29

Chain i

eL36