J3_6MTD_013
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAA(B8W)C*GCGAC
- Length
- 26 nucleotides
- Bulged bases
- 6MTD|1|5|C|4116, 6MTD|1|5|U|4117, 6MTD|1|5|U|4118, 6MTD|1|5|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|G|4091
6MTD|1|5|G|4092
6MTD|1|5|G|4093
6MTD|1|5|G|4094
*
6MTD|1|5|C|4114
6MTD|1|5|G|4115
6MTD|1|5|C|4116
6MTD|1|5|U|4117
6MTD|1|5|U|4118
6MTD|1|5|C|4119
6MTD|1|5|U|4120
6MTD|1|5|G|4121
6MTD|1|5|G|4122
6MTD|1|5|C|4123
6MTD|1|5|G|4124
6MTD|1|5|C|4125
6MTD|1|5|C|4126
6MTD|1|5|A|4127
6MTD|1|5|A|4128
6MTD|1|5|B8W|4129
6MTD|1|5|C|4130
*
6MTD|1|5|G|4154
6MTD|1|5|C|4155
6MTD|1|5|G|4156
6MTD|1|5|A|4157
6MTD|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- eL27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: