J3_6MTD_014

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

6MTD|1|5|U|4374

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|G|4228
6MTD|1|5|U|4229
6MTD|1|5|C|4230
*
6MTD|1|5|G|4331
6MTD|1|5|C|4332
6MTD|1|5|C|4333
6MTD|1|5|U|4334
6MTD|1|5|5MC|4335
6MTD|1|5|A|4336
6MTD|1|5|C|4337
6MTD|1|5|G|4338
6MTD|1|5|A|4339
6MTD|1|5|U|4340
6MTD|1|5|C|4341
6MTD|1|5|C|4342
6MTD|1|5|U|4343
*
6MTD|1|5|A|4369
6MTD|1|5|OMG|4370
6MTD|1|5|MHG|4371
6MTD|1|5|U|4372
6MTD|1|5|G|4373
6MTD|1|5|U|4374
6MTD|1|5|C|4375

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain o

eL42