J3_6MTD_017

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

6MTD|1|5|U|4989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6MTD_017 not in the Motif Atlas

Homologous match to J3_8GLP_037

Geometric discrepancy: 0.4913

The information below is about J3_8GLP_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|4970
6MTD|1|5|A|4971
6MTD|1|5|U|4972
*
6MTD|1|5|G|4986
6MTD|1|5|C|4987
6MTD|1|5|U|4988
6MTD|1|5|U|4989
6MTD|1|5|C|4990
6MTD|1|5|U|4991
*
6MTD|1|5|A|5060
6MTD|1|5|A|5061
6MTD|1|5|G|5062
6MTD|1|5|G|5063

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

uL3

Chain P

uL22

Chain d

eL31