J3_6MTD_024

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6MTD|1|9|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|9|C|1094
6MTD|1|9|U|1095
6MTD|1|9|G|1096
*
6MTD|1|9|U|1136
6MTD|1|9|U|1137
6MTD|1|9|C|1138
6MTD|1|9|C|1139
6MTD|1|9|G|1140
*
6MTD|1|9|C|1147
6MTD|1|9|A|1148
6MTD|1|9|A|1149
6MTD|1|9|A|1150
6MTD|1|9|G|1151

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

uS2

Chain VV

eS21

Chain WW

uS8

Chain aa

eS26

Chain bb

eS27