J3_6MTD_033

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

6MTD|1|5|C|216, 6MTD|1|5|C|217, 6MTD|1|5|A|218, 6MTD|1|5|G|219, 6MTD|1|5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|196
6MTD|1|5|A|197
6MTD|1|5|A|198
6MTD|1|5|G|199
*
6MTD|1|5|C|215
6MTD|1|5|C|216
6MTD|1|5|C|217
6MTD|1|5|A|218
6MTD|1|5|G|219
6MTD|1|5|C|220
6MTD|1|5|C|221
6MTD|1|5|C|222
6MTD|1|5|G|223
6MTD|1|5|U|224
6MTD|1|5|G|225
6MTD|1|5|G|226
6MTD|1|5|A|227
6MTD|1|5|C|228
*
6MTD|1|5|G|240
6MTD|1|5|G|241
6MTD|1|5|U|242
6MTD|1|5|A|243
6MTD|1|5|G|244

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain Y

uL24