J3_6MTD_036

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

6MTD|1|5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|451
6MTD|1|5|A|452
6MTD|1|5|G|453
6MTD|1|5|U|454
6MTD|1|5|C|455
*
6MTD|1|5|G|701
6MTD|1|5|U|702
6MTD|1|5|G|703
6MTD|1|5|C|704
6MTD|1|5|G|705
*
6MTD|1|5|C|1292
6MTD|1|5|G|1293
6MTD|1|5|A|1294
6MTD|1|5|U|1295
6MTD|1|5|G|1296

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain e

eL32

Chain f

eL33