J3_6MTD_037

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

6MTD|1|5|C|1237, 6MTD|1|5|G|1271, 6MTD|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|982
6MTD|1|5|U|983
6MTD|1|5|C|984
*
6MTD|1|5|G|1070
6MTD|1|5|C|1071
6MTD|1|5|C|1072
6MTD|1|5|G|1073
6MTD|1|5|G|1074
*
6MTD|1|5|C|1236
6MTD|1|5|C|1237
6MTD|1|5|A|1238
6MTD|1|5|C|1239
6MTD|1|5|G|1244
6MTD|1|5|C|1245
6MTD|1|5|G|1246
6MTD|1|5|U|1247
6MTD|1|5|C|1248
6MTD|1|5|C|1249
6MTD|1|5|C|1250
6MTD|1|5|C|1251
6MTD|1|5|C|1252
6MTD|1|5|G|1271
6MTD|1|5|C|1272
6MTD|1|5|G|1273

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain E

eL6

Chain F

uL30

Chain b

eL29