J3_6MTD_039
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 6MTD|1|5|C|2470, 6MTD|1|5|A|2472, 6MTD|1|5|G|2475
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6MTD|1|5|A|2451
6MTD|1|5|G|2452
6MTD|1|5|A|2453
6MTD|1|5|U|2454
6MTD|1|5|G|2455
6MTD|1|5|G|2456
*
6MTD|1|5|C|2465
6MTD|1|5|G|2466
6MTD|1|5|U|2467
6MTD|1|5|U|2468
6MTD|1|5|C|2469
6MTD|1|5|C|2470
6MTD|1|5|G|2471
6MTD|1|5|A|2472
6MTD|1|5|A|2473
6MTD|1|5|G|2474
6MTD|1|5|G|2475
6MTD|1|5|G|2476
*
6MTD|1|5|C|2501
6MTD|1|5|A|2502
6MTD|1|5|G|2503
6MTD|1|5|C|2504
6MTD|1|5|C|2505
6MTD|1|5|G|2506
6MTD|1|5|A|2507
6MTD|1|5|PSU|2508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- uL2
- Chain G
- eL8
- Chain N
- eL15
- Chain X
- uL23
- Chain j
- eL37
Coloring options: