J3_6MTD_042

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6MTD|1|5|U|4882, 6MTD|1|5|A|4938, 6MTD|1|5|C|4940, 6MTD|1|5|A|4943, 6MTD|1|5|C|4944, 6MTD|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTD|1|5|C|4749
6MTD|1|5|G|4750
6MTD|1|5|G|4751
6MTD|1|5|U|4752
6MTD|1|5|U|4753
6MTD|1|5|G|4754
*
6MTD|1|5|C|4879
6MTD|1|5|C|4880
6MTD|1|5|U|4881
6MTD|1|5|U|4882
6MTD|1|5|C|4883
*
6MTD|1|5|G|4936
6MTD|1|5|C|4937
6MTD|1|5|A|4938
6MTD|1|5|C|4939
6MTD|1|5|C|4940
6MTD|1|5|G|4941
6MTD|1|5|C|4942
6MTD|1|5|A|4943
6MTD|1|5|C|4944
6MTD|1|5|G|4945
6MTD|1|5|U|4946
6MTD|1|5|U|4947
6MTD|1|5|C|4948
6MTD|1|5|G|4949
6MTD|1|5|U|4950
6MTD|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33