J3_6MTE_016

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

6MTE|1|5|U|4374

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTE|1|5|G|4228
6MTE|1|5|U|4229
6MTE|1|5|C|4230
*
6MTE|1|5|G|4331
6MTE|1|5|C|4332
6MTE|1|5|C|4333
6MTE|1|5|U|4334
6MTE|1|5|5MC|4335
6MTE|1|5|A|4336
6MTE|1|5|C|4337
6MTE|1|5|G|4338
6MTE|1|5|A|4339
6MTE|1|5|U|4340
6MTE|1|5|C|4341
6MTE|1|5|C|4342
6MTE|1|5|U|4343
*
6MTE|1|5|A|4369
6MTE|1|5|OMG|4370
6MTE|1|5|MHG|4371
6MTE|1|5|U|4372
6MTE|1|5|G|4373
6MTE|1|5|U|4374
6MTE|1|5|C|4375

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Q

eL18

Chain T

eL21

Chain a

uL15

Chain o

eL42