J3_6MTE_039

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGGUC*GGAGU*AAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTE|1|5|G|2439
6MTE|1|5|U|2440
6MTE|1|5|C|2441
6MTE|1|5|G|2442
6MTE|1|5|G|2443
6MTE|1|5|U|2444
6MTE|1|5|C|2445
*
6MTE|1|5|G|2515
6MTE|1|5|G|2516
6MTE|1|5|A|2517
6MTE|1|5|G|2518
6MTE|1|5|U|2519
*
6MTE|1|5|A|2536
6MTE|1|5|A|2537
6MTE|1|5|U|2538

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain X

uL23

Chain g

eL34

Chain k

eL38

Chain l

eL39