J3_6MTE_044

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

6MTE|1|5|U|4882, 6MTE|1|5|A|4938, 6MTE|1|5|C|4940, 6MTE|1|5|A|4943, 6MTE|1|5|C|4944, 6MTE|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MTE|1|5|C|4749
6MTE|1|5|G|4750
6MTE|1|5|G|4751
6MTE|1|5|U|4752
6MTE|1|5|U|4753
6MTE|1|5|G|4754
*
6MTE|1|5|C|4879
6MTE|1|5|C|4880
6MTE|1|5|U|4881
6MTE|1|5|U|4882
6MTE|1|5|C|4883
*
6MTE|1|5|G|4936
6MTE|1|5|C|4937
6MTE|1|5|A|4938
6MTE|1|5|C|4939
6MTE|1|5|C|4940
6MTE|1|5|G|4941
6MTE|1|5|C|4942
6MTE|1|5|A|4943
6MTE|1|5|C|4944
6MTE|1|5|G|4945
6MTE|1|5|U|4946
6MTE|1|5|U|4947
6MTE|1|5|C|4948
6MTE|1|5|G|4949
6MTE|1|5|U|4950
6MTE|1|5|G|4951

Current chains

Chain 5

28S rRNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33