J3_6N8K_006

3D structure

PDB id

6N8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACG*CGCUAAGG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8K|1|1|G|1230
6N8K|1|1|A|1231
6N8K|1|1|C|1232
6N8K|1|1|G|1233
*
6N8K|1|1|C|1255
6N8K|1|1|G|1256
6N8K|1|1|C|1257
6N8K|1|1|U|1258
6N8K|1|1|A|1259
6N8K|1|1|A|1260
6N8K|1|1|G|1261
6N8K|1|1|G|1262
*
6N8K|1|1|C|1277
6N8K|1|1|A|1278
6N8K|1|1|C|1279

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4