J3_6N8K_017
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAGA*UCUUG
- Length
- 29 nucleotides
- Bulged bases
- 6N8K|1|1|U|343, 6N8K|1|1|A|351, 6N8K|1|3|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8K|1|1|C|340
6N8K|1|1|G|341
6N8K|1|1|A|342
6N8K|1|1|U|343
6N8K|1|1|A|344
6N8K|1|1|G|345
6N8K|1|1|C|346
6N8K|1|1|G|347
6N8K|1|1|A|348
6N8K|1|1|A|349
6N8K|1|1|C|350
6N8K|1|1|A|351
6N8K|1|1|A|352
6N8K|1|1|G|353
6N8K|1|1|U|354
6N8K|1|1|A|355
6N8K|1|1|C|356
*
6N8K|1|1|G|363
6N8K|1|1|G|364
6N8K|1|1|A|365
6N8K|1|1|A|366
6N8K|1|1|A|367
6N8K|1|1|G|368
6N8K|1|1|A|369
*
6N8K|1|3|U|20
6N8K|1|3|C|21
6N8K|1|3|U|22
6N8K|1|3|U|23
6N8K|1|3|G|24
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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