J3_6N8K_028
3D structure
- PDB id
- 6N8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of early cytoplasmic-immediate (ECI) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6N8K|1|1|A|817, 6N8K|1|1|G|924, 6N8K|1|1|A|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N8K_028 not in the Motif Atlas
- Homologous match to J3_8CRE_009
- Geometric discrepancy: 0.134
- The information below is about J3_8CRE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N8K|1|1|U|814
6N8K|1|1|G|815
6N8K|1|1|A|816
6N8K|1|1|A|817
6N8K|1|1|C|818
6N8K|1|1|U|819
6N8K|1|1|A|820
*
6N8K|1|1|U|905
6N8K|1|1|A|906
6N8K|1|1|G|907
*
6N8K|1|1|C|923
6N8K|1|1|G|924
6N8K|1|1|A|925
6N8K|1|1|A|926
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain N
- 60S ribosomal protein L15-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
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