J3_6N8L_024

3D structure

PDB id

6N8L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of early cytoplasmic-late (ECL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AAUAG*CGUAG*UCGAAUU

Length

17 nucleotides

Bulged bases

6N8L|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8L|1|1|A|827
6N8L|1|1|A|828
6N8L|1|1|U|829
6N8L|1|1|A|830
6N8L|1|1|G|831
*
6N8L|1|1|C|863
6N8L|1|1|G|864
6N8L|1|1|U|865
6N8L|1|1|A|866
6N8L|1|1|G|867
*
6N8L|1|1|U|892
6N8L|1|1|C|893
6N8L|1|1|G|894
6N8L|1|1|A|895
6N8L|1|1|A|896
6N8L|1|1|U|897
6N8L|1|1|U|898

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A