J3_6N8M_023

3D structure

PDB id

6N8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCUUCA*UAACUGAAU*AGGAAGGAAUA

Length

26 nucleotides

Bulged bases

6N8M|1|A|U|1629, 6N8M|1|A|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8M|1|A|U|1627
6N8M|1|A|C|1628
6N8M|1|A|U|1629
6N8M|1|A|U|1630
6N8M|1|A|C|1631
6N8M|1|A|A|1632
*
6N8M|1|A|U|1641
6N8M|1|A|A|1642
6N8M|1|A|A|1643
6N8M|1|A|C|1644
6N8M|1|A|U|1645
6N8M|1|A|G|1646
6N8M|1|A|A|1647
6N8M|1|A|A|1648
6N8M|1|A|U|1649
*
6N8M|1|A|A|1806
6N8M|1|A|G|1807
6N8M|1|A|G|1808
6N8M|1|A|A|1809
6N8M|1|A|A|1810
6N8M|1|A|G|1811
6N8M|1|A|G|1812
6N8M|1|A|A|1813
6N8M|1|A|A|1814
6N8M|1|A|U|1815
6N8M|1|A|A|1816

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L27-A

Chain t

60S ribosomal protein L34-A