Loop J3_6N8M

3D structure

PDB id: 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU
Length: 36 nucleotides
Bulged bases: 6N8M|1|A|A|3172, 6N8M|1|A|G|3173, 6N8M|1|A|A|3215, 6N8M|1|A|G|3216, 6N8M|1|A|G|3219, 6N8M|1|A|A|3268, 6N8M|1|A|U|3270, 6N8M|1|A|C|3272
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6N8M|1|A|A|3168
6N8M|1|A|U|3169
6N8M|1|A|A|3170
6N8M|1|A|U|3171
6N8M|1|A|A|3172
6N8M|1|A|G|3173
6N8M|1|A|A|3174
6N8M|1|A|U|3175
6N8M|1|A|G|3176
*
6N8M|1|A|C|3212
6N8M|1|A|A|3213
6N8M|1|A|U|3214
6N8M|1|A|A|3215
6N8M|1|A|G|3216
6N8M|1|A|C|3217
6N8M|1|A|A|3218
6N8M|1|A|G|3219
6N8M|1|A|G|3220
*
6N8M|1|A|C|3265
6N8M|1|A|G|3266
6N8M|1|A|A|3267
6N8M|1|A|A|3268
6N8M|1|A|U|3269
6N8M|1|A|U|3270
6N8M|1|A|G|3271
6N8M|1|A|C|3272
6N8M|1|A|A|3273
6N8M|1|A|A|3274
6N8M|1|A|U|3275
6N8M|1|A|G|3276
6N8M|1|A|U|3277
6N8M|1|A|C|3278
6N8M|1|A|A|3279
6N8M|1|A|U|3280
6N8M|1|A|U|3281
6N8M|1|A|U|3282

Current chains

Chain A: Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain H: 60S ribosomal protein L6-A
Chain O: 60S ribosomal protein L14-A
Chain b: 60S ribosomal protein L16-A
Chain c: 60S ribosomal protein L17-A
Chain s: 60S ribosomal protein L33-A

J3_6N8M_029