J3_6N8M_031
3D structure
- PDB id
- 6N8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of pre-Lsg1 (PL) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AAC*GAUACGUAAUG*CAUCGAAUCUU
- Length
- 25 nucleotides
- Bulged bases
- 6N8M|1|C|U|60, 6N8M|1|C|C|62, 6N8M|1|C|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8M|1|C|A|43
6N8M|1|C|A|44
6N8M|1|C|C|45
*
6N8M|1|C|G|58
6N8M|1|C|A|59
6N8M|1|C|U|60
6N8M|1|C|A|61
6N8M|1|C|C|62
6N8M|1|C|G|63
6N8M|1|C|U|64
6N8M|1|C|A|65
6N8M|1|C|A|66
6N8M|1|C|U|67
6N8M|1|C|G|68
*
6N8M|1|C|C|91
6N8M|1|C|A|92
6N8M|1|C|U|93
6N8M|1|C|C|94
6N8M|1|C|G|95
6N8M|1|C|A|96
6N8M|1|C|A|97
6N8M|1|C|U|98
6N8M|1|C|C|99
6N8M|1|C|U|100
6N8M|1|C|U|101
Current chains
- Chain C
- 5.8S RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain k
- 60S ribosomal protein L25
- Chain l
- 60S ribosomal protein L26-A
- Chain u
- 60S ribosomal protein L35-A
- Chain w
- 60S ribosomal protein L37-A
- Chain y
- 60S ribosomal protein L39
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