J3_6N8N_010

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAC*GUAACUGAAU*AGGAAG

Length

19 nucleotides

Bulged bases

6N8N|1|A|A|1642

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|C|1631
6N8N|1|A|A|1632
6N8N|1|A|C|1633
*
6N8N|1|A|G|1640
6N8N|1|A|U|1641
6N8N|1|A|A|1642
6N8N|1|A|A|1643
6N8N|1|A|C|1644
6N8N|1|A|U|1645
6N8N|1|A|G|1646
6N8N|1|A|A|1647
6N8N|1|A|A|1648
6N8N|1|A|U|1649
*
6N8N|1|A|A|1806
6N8N|1|A|G|1807
6N8N|1|A|G|1808
6N8N|1|A|A|1809
6N8N|1|A|A|1810
6N8N|1|A|G|1811

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L27-A

Chain t

60S ribosomal protein L34-A