J3_6N8N_022
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAUGGG*CCGUUUCAAAGGC*GCCACCAU
- Length
- 28 nucleotides
- Bulged bases
- 6N8N|1|A|C|1556, 6N8N|1|A|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8N|1|A|A|1537
6N8N|1|A|G|1538
6N8N|1|A|A|1539
6N8N|1|A|U|1540
6N8N|1|A|G|1541
6N8N|1|A|G|1542
6N8N|1|A|G|1543
*
6N8N|1|A|C|1550
6N8N|1|A|C|1551
6N8N|1|A|G|1552
6N8N|1|A|U|1553
6N8N|1|A|U|1554
6N8N|1|A|U|1555
6N8N|1|A|C|1556
6N8N|1|A|A|1557
6N8N|1|A|A|1558
6N8N|1|A|A|1559
6N8N|1|A|G|1560
6N8N|1|A|G|1561
6N8N|1|A|C|1562
*
6N8N|1|A|G|1577
6N8N|1|A|C|1578
6N8N|1|A|C|1579
6N8N|1|A|A|1580
6N8N|1|A|C|1581
6N8N|1|A|C|1582
6N8N|1|A|A|1583
6N8N|1|A|U|1584
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain D
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L8-A
- Chain a
- 60S ribosomal protein L15-A
- Chain k
- 60S ribosomal protein L25
- Chain w
- 60S ribosomal protein L37-A
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