J3_6N8N_024

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUG*CUUAUUC*GAAGACAUU

Length

20 nucleotides

Bulged bases

6N8N|1|A|U|2514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|A|2432
6N8N|1|A|U|2433
6N8N|1|A|U|2434
6N8N|1|A|G|2435
*
6N8N|1|A|C|2512
6N8N|1|A|U|2513
6N8N|1|A|U|2514
6N8N|1|A|A|2515
6N8N|1|A|U|2516
6N8N|1|A|U|2517
6N8N|1|A|C|2518
*
6N8N|1|A|G|2589
6N8N|1|A|A|2590
6N8N|1|A|A|2591
6N8N|1|A|G|2592
6N8N|1|A|A|2593
6N8N|1|A|C|2594
6N8N|1|A|A|2595
6N8N|1|A|U|2596
6N8N|1|A|U|2597

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L8-A

Chain a

60S ribosomal protein L15-A

Chain v

60S ribosomal protein L36-A