J3_6N8N_027

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UAUC*GUUGG*CCACUAAUA

Length

18 nucleotides

Bulged bases

6N8N|1|A|A|2887, 6N8N|1|A|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|U|2886
6N8N|1|A|A|2887
6N8N|1|A|U|2888
6N8N|1|A|C|2889
*
6N8N|1|A|G|2914
6N8N|1|A|U|2915
6N8N|1|A|U|2916
6N8N|1|A|G|2917
6N8N|1|A|G|2918
*
6N8N|1|A|C|2928
6N8N|1|A|C|2929
6N8N|1|A|A|2930
6N8N|1|A|C|2931
6N8N|1|A|U|2932
6N8N|1|A|A|2933
6N8N|1|A|A|2934
6N8N|1|A|U|2935
6N8N|1|A|A|2936

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain V

60S ribosomal export protein NMD3

Chain b

60S ribosomal protein L16-A

Chain i

60S ribosomal protein L23-A