J3_6N8N_028

3D structure

PDB id

6N8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU

Length

32 nucleotides

Bulged bases

6N8N|1|A|A|3172, 6N8N|1|A|G|3173, 6N8N|1|A|A|3215, 6N8N|1|A|G|3216, 6N8N|1|A|C|3217, 6N8N|1|A|G|3219, 6N8N|1|A|A|3268, 6N8N|1|A|U|3270, 6N8N|1|A|C|3272, 6N8N|1|A|U|3275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6N8N|1|A|A|3170
6N8N|1|A|U|3171
6N8N|1|A|A|3172
6N8N|1|A|G|3173
6N8N|1|A|A|3174
6N8N|1|A|U|3175
6N8N|1|A|G|3176
*
6N8N|1|A|C|3212
6N8N|1|A|A|3213
6N8N|1|A|U|3214
6N8N|1|A|A|3215
6N8N|1|A|G|3216
6N8N|1|A|C|3217
6N8N|1|A|A|3218
6N8N|1|A|G|3219
6N8N|1|A|G|3220
*
6N8N|1|A|C|3265
6N8N|1|A|G|3266
6N8N|1|A|A|3267
6N8N|1|A|A|3268
6N8N|1|A|U|3269
6N8N|1|A|U|3270
6N8N|1|A|G|3271
6N8N|1|A|C|3272
6N8N|1|A|A|3273
6N8N|1|A|A|3274
6N8N|1|A|U|3275
6N8N|1|A|G|3276
6N8N|1|A|U|3277
6N8N|1|A|C|3278
6N8N|1|A|A|3279
6N8N|1|A|U|3280

Current chains

Chain A

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain H

60S ribosomal protein L6-A

Chain O

60S ribosomal protein L14-A

Chain b

60S ribosomal protein L16-A

Chain c

60S ribosomal protein L17-A

Chain s

60S ribosomal protein L33-A