J3_6N8N_033
3D structure
- PDB id
- 6N8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lsg1-engaged (LE) pre-60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCUAGACAGCCGGAC*GCUAAGGAGUG*CUCACCGGCCGAA
- Length
- 39 nucleotides
- Bulged bases
- 6N8N|1|A|A|1221, 6N8N|1|A|A|1263
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6N8N|1|A|U|1218
6N8N|1|A|C|1219
6N8N|1|A|U|1220
6N8N|1|A|A|1221
6N8N|1|A|G|1222
6N8N|1|A|A|1223
6N8N|1|A|C|1224
6N8N|1|A|A|1225
6N8N|1|A|G|1226
6N8N|1|A|C|1227
6N8N|1|A|C|1228
6N8N|1|A|G|1229
6N8N|1|A|G|1230
6N8N|1|A|A|1231
6N8N|1|A|C|1232
*
6N8N|1|A|G|1256
6N8N|1|A|C|1257
6N8N|1|A|U|1258
6N8N|1|A|A|1259
6N8N|1|A|A|1260
6N8N|1|A|G|1261
6N8N|1|A|G|1262
6N8N|1|A|A|1263
6N8N|1|A|G|1264
6N8N|1|A|U|1265
6N8N|1|A|G|1266
*
6N8N|1|A|C|1275
6N8N|1|A|U|1276
6N8N|1|A|C|1277
6N8N|1|A|A|1278
6N8N|1|A|C|1279
6N8N|1|A|C|1280
6N8N|1|A|G|1281
6N8N|1|A|G|1282
6N8N|1|A|C|1283
6N8N|1|A|C|1284
6N8N|1|A|G|1285
6N8N|1|A|A|1286
6N8N|1|A|A|1287
Current chains
- Chain A
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain L
- Ribosomal protein L12
- Chain Y
- Tyrosine-protein phosphatase YVH1
- Chain f
- 60S ribosomal protein L20-A
- Chain z
- Ubiquitin-60S ribosomal protein L40
Coloring options: