J3_6N9E_003
3D structure
- PDB id
- 6N9E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 6N9E|1|1A|U|288
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9E_003 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.1077
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N9E|1|1A|U|258
6N9E|1|1A|A|259
6N9E|1|1A|A|260
6N9E|1|1A|A|261
6N9E|1|1A|C|262
*
6N9E|1|1A|G|282
6N9E|1|1A|G|283
6N9E|1|1A|G|284
6N9E|1|1A|U|285
6N9E|1|1A|C|286
6N9E|1|1A|G|287
6N9E|1|1A|U|288
6N9E|1|1A|G|289
*
6N9E|1|1A|C|396
6N9E|1|1A|G|397
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1I
- 50S Ribosomal Protein L9
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