J3_6N9E_056

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9E_056 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1013

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6N9E|1|1A|G|1470
6N9E|1|1A|G|1471
6N9E|1|1A|G|1472
6N9E|1|1A|A|1473
6N9E|1|1A|C|1474
6N9E|1|1A|G|1475
*
6N9E|1|1A|C|1611
6N9E|1|1A|C|1612
*
6N9E|1|1A|G|1615
6N9E|1|1A|A|1616
6N9E|1|1A|A|1617
6N9E|1|1A|A|1618
6N9E|1|1A|A|1619
6N9E|1|1A|G|1620
6N9E|1|1A|C|1621

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S Ribosomal Protein L2