J3_6N9E_065

3D structure

PDB id

6N9E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic CC-Pmn and bound to mRNA and P-site tRNA at 3.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6N9E_065 not in the Motif Atlas

Homologous match to J3_4WF9_017

Geometric discrepancy: 0.1048

The information below is about J3_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6N9E|1|2A|G|1424
6N9E|1|2A|G|1425
6N9E|1|2A|G|1426
6N9E|1|2A|A|1427
6N9E|1|2A|C|1428
6N9E|1|2A|G|1429
*
6N9E|1|2A|C|1564
6N9E|1|2A|C|1565
*
6N9E|1|2A|G|1568
6N9E|1|2A|A|1569
6N9E|1|2A|A|1570
6N9E|1|2A|A|1571
6N9E|1|2A|A|1572
6N9E|1|2A|G|1573
6N9E|1|2A|C|1574

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S Ribosomal Protein L2