J3_6N9F_040
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGG*CUAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9F_040 not in the Motif Atlas
- Geometric match to J3_6CZR_016
- Geometric discrepancy: 0.1458
- The information below is about J3_6CZR_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.4
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6N9F|1|2a|C|586
6N9F|1|2a|G|587
6N9F|1|2a|G|588
*
6N9F|1|2a|C|651
6N9F|1|2a|U|652
6N9F|1|2a|A|653
6N9F|1|2a|G|654
*
6N9F|1|2a|C|754
6N9F|1|2a|G|755
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2h
- 30S Ribosomal Protein S8
- Chain 2l
- 30S ribosomal protein S12
- Chain 2o
- 30S ribosomal protein S15
- Chain 2q
- 30S ribosomal protein S17
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