J3_6N9F_055
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 6N9F|1|1B|U|14, 6N9F|1|1B|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9F_055 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3798
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6N9F|1|1B|C|10
6N9F|1|1B|C|11
6N9F|1|1B|C|12
6N9F|1|1B|A|13
6N9F|1|1B|U|14
6N9F|1|1B|A|15
6N9F|1|1B|G|16
*
6N9F|1|1B|C|68
6N9F|1|1B|G|69
*
6N9F|1|1B|U|108
6N9F|1|1B|C|109
6N9F|1|1B|G|110
6N9F|1|1B|G|111
Current chains
- Chain 1B
- 5S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1S
- 50S Ribosomal Protein L18
- Chain 1Z
- 50S ribosomal protein L25
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