J3_6N9F_070
3D structure
- PDB id
- 6N9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with a short substrate mimic ACCA-DPhe and bound to mRNA and P-site tRNA at 3.7A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6N9F|1|2a|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6N9F_070 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1521
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N9F|1|2a|C|1116
6N9F|1|2a|G|1117
6N9F|1|2a|C|1118
*
6N9F|1|2a|G|1155
6N9F|1|2a|G|1156
6N9F|1|2a|A|1157
6N9F|1|2a|C|1158
6N9F|1|2a|U|1159
6N9F|1|2a|G|1160
6N9F|1|2a|C|1161
*
6N9F|1|2a|G|1175
6N9F|1|2a|A|1176
6N9F|1|2a|G|1177
6N9F|1|2a|G|1178
6N9F|1|2a|A|1179
6N9F|1|2a|A|1180
6N9F|1|2a|G|1181
6N9F|1|2a|G|1182
6N9F|1|2a|A|1183
6N9F|1|2a|G|1184
Current chains
- Chain 2a
- 16S Ribosomal RNA
Nearby chains
- Chain 2b
- 30S Ribosomal Protein S2
- Chain 2g
- 30S Ribosomal Protein S7
- Chain 2i
- 30S ribosomal protein S9
- Chain 2n
- 30S ribosomal protein S14 type Z
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