J3_6ND5_006

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CUUUAAAG*CAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|1A|G|1055
6ND5|1|1A|G|1056
6ND5|1|1A|A|1057
6ND5|1|1A|G|1058
*
6ND5|1|1A|C|1080
6ND5|1|1A|U|1081
6ND5|1|1A|U|1082
6ND5|1|1A|U|1083
6ND5|1|1A|A|1084
6ND5|1|1A|A|1085
6ND5|1|1A|A|1086
6ND5|1|1A|G|1087
*
6ND5|1|1A|C|1102
6ND5|1|1A|A|1103
6ND5|1|1A|C|1104

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36