J3_6ND5_021
3D structure
- PDB id
- 6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6ND5_021 not in the Motif Atlas
- Homologous match to J3_5J7L_005
- Geometric discrepancy: 0.0831
- The information below is about J3_5J7L_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
6ND5|1|1a|U|943
6ND5|1|1a|G|944
6ND5|1|1a|G|945
6ND5|1|1a|A|946
*
6ND5|1|1a|U|1235
6ND5|1|1a|A|1236
6ND5|1|1a|C|1237
*
6ND5|1|1a|G|1337
6ND5|1|1a|G|1338
6ND5|1|1a|A|1339
6ND5|1|1a|A|1340
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1i
- 30S ribosomal protein S9
- Chain 1m
- 30S ribosomal protein S13
- Chain 1u
- 30S ribosomal protein Thx
- Chain 1x
- Transfer RNA; tRNA
- Chain 1y
- Transfer RNA; tRNA
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