J3_6ND5_052

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6ND5_052 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.2198

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6ND5|1|2a|U|1073
6ND5|1|2a|G|1074
*
6ND5|1|2a|U|1083
6ND5|1|2a|G|1084
6ND5|1|2a|U|1085
6ND5|1|2a|U|1086
6ND5|1|2a|G|1087
*
6ND5|1|2a|C|1098
6ND5|1|2a|G|1099
6ND5|1|2a|C|1100
6ND5|1|2a|A|1101
6ND5|1|2a|A|1102

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5