3D structure

PDB id
6ND5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
CGC*GGACUGC*GAGGAAGGAG
Length
20 nucleotides
Bulged bases
6ND5|1|1a|A|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6ND5_064 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1363
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

6ND5|1|1a|C|1116
6ND5|1|1a|G|1117
6ND5|1|1a|C|1118
*
6ND5|1|1a|G|1155
6ND5|1|1a|G|1156
6ND5|1|1a|A|1157
6ND5|1|1a|C|1158
6ND5|1|1a|U|1159
6ND5|1|1a|G|1160
6ND5|1|1a|C|1161
*
6ND5|1|1a|G|1175
6ND5|1|1a|A|1176
6ND5|1|1a|G|1177
6ND5|1|1a|G|1178
6ND5|1|1a|A|1179
6ND5|1|1a|A|1180
6ND5|1|1a|G|1181
6ND5|1|1a|G|1182
6ND5|1|1a|A|1183
6ND5|1|1a|G|1184

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1b
30S ribosomal protein S2
Chain 1g
30S ribosomal protein S7
Chain 1i
30S ribosomal protein S9
Chain 1j
30S ribosomal protein S10
Chain 1n
30S ribosomal protein S14 type Z

Coloring options:


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