J3_6ND5_070

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

6ND5|1|2a|C|48, 6ND5|1|2a|A|50, 6ND5|1|2a|A|51, 6ND5|1|2a|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|2a|G|46
6ND5|1|2a|C|47
6ND5|1|2a|C|48
6ND5|1|2a|U|49
6ND5|1|2a|A|50
6ND5|1|2a|A|51
6ND5|1|2a|G|52
*
6ND5|1|2a|U|359
6ND5|1|2a|A|360
6ND5|1|2a|G|361
6ND5|1|2a|G|362
6ND5|1|2a|A|363
6ND5|1|2a|A|364
6ND5|1|2a|U|365
6ND5|1|2a|C|366
6ND5|1|2a|U|367
6ND5|1|2a|U|368
6ND5|1|2a|C|369
*
6ND5|1|2a|G|392
6ND5|1|2a|A|393
6ND5|1|2a|G|394
6ND5|1|2a|C|395

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2l

30S ribosomal protein S12

Chain 2p

30S ribosomal protein S16