J3_6ND5_076

3D structure

PDB id

6ND5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

6ND5|1|1a|G|1003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ND5|1|1a|G|1002
6ND5|1|1a|G|1003
6ND5|1|1a|A|1004
6ND5|1|1a|A|1005
6ND5|1|1a|C|1006
*
6ND5|1|1a|G|1023
6ND5|1|1a|G|1024
6ND5|1|1a|U|1025
6ND5|1|1a|G|1026
6ND5|1|1a|C|1027
6ND5|1|1a|C|1028
*
6ND5|1|1a|G|1033
6ND5|1|1a|G|1034
6ND5|1|1a|A|1035
6ND5|1|1a|G|1036
6ND5|1|1a|C|1037
6ND5|1|1a|C|1038

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains